EDT-Former SFT (Instruction Tuning) Data
0
4 commits
2 linked in READMEs
updated May 13, 2026
Supervised fine-tuning corpus for EDT-Former Stage 2, as described in the ICLR 2026 paper:
Entropy-Guided Dynamic Tokens for Graph-LLM Alignment in Molecular Understanding Zihao Jing, Qiuhao Zeng, Ruiyi Fang, Yan Sun, Boyu Wang, Pingzhao Hu ICLR 2026 · Paper · Code
This dataset is used to fine-tune the full EDT-Former model (encoder + Llama-3.1-8B-Instruct) on molecular instruction-following tasks. It is derived from the Mol-LLaMA-Instruct dataset, preprocessed into JSONL format with molecule graph features.
| File | Description | Size |
|---|---|---|
comprehensive_conversations-preprocessed.jsonl | Multi-turn molecular conversations | ~2.4 GB |
detailed_structural_descriptions-preprocessed.jsonl | Structural description pairs | ~3.3 GB |
structure2biological_features_relationships-preprocessed.jsonl | Structure-to-biology mappings | ~3.0 GB |
structure2chemical_features_relationships-preprocessed.jsonl | Structure-to-chemistry mappings | ~3.0 GB |
from datasets import load_dataset
dataset = load_dataset("zihaojing/EDT-Former-sft-data")
Or point to it in the EDT-Former config:
# configs/stage2_dqw2d/data_config_preprocessed.yaml
use_preprocessed: true
preprocessed_data: zihaojing/EDT-Former-sft-data
| Resource | Link |
|---|---|
| Pretrain Data | zihaojing/EDT-Former-pretrain-data |
| Encoder (Stage 1) | zihaojing/EDT-Former-encoder |
| Full Model (Stage 2) | zihaojing/EDT-Former-model |
| Code | selmiss/DQ-Former |
@inproceedings{jing2026edtformer,
title={Entropy-Guided Dynamic Tokens for Graph-LLM Alignment in Molecular Understanding},
author={Jing, Zihao and Zeng, Qiuhao and Fang, Ruiyi and Sun, Yan and Wang, Boyu and Hu, Pingzhao},
booktitle={International Conference on Learning Representations (ICLR)},
year={2026}
}
EDT-Former SFT (Instruction Tuning) Data
0
4 commits
2 linked in READMEs
updated May 13, 2026
Supervised fine-tuning corpus for EDT-Former Stage 2, as described in the ICLR 2026 paper:
Entropy-Guided Dynamic Tokens for Graph-LLM Alignment in Molecular Understanding Zihao Jing, Qiuhao Zeng, Ruiyi Fang, Yan Sun, Boyu Wang, Pingzhao Hu ICLR 2026 · Paper · Code
This dataset is used to fine-tune the full EDT-Former model (encoder + Llama-3.1-8B-Instruct) on molecular instruction-following tasks. It is derived from the Mol-LLaMA-Instruct dataset, preprocessed into JSONL format with molecule graph features.
| File | Description | Size |
|---|---|---|
comprehensive_conversations-preprocessed.jsonl | Multi-turn molecular conversations | ~2.4 GB |
detailed_structural_descriptions-preprocessed.jsonl | Structural description pairs | ~3.3 GB |
structure2biological_features_relationships-preprocessed.jsonl | Structure-to-biology mappings | ~3.0 GB |
structure2chemical_features_relationships-preprocessed.jsonl | Structure-to-chemistry mappings | ~3.0 GB |
from datasets import load_dataset
dataset = load_dataset("zihaojing/EDT-Former-sft-data")
Or point to it in the EDT-Former config:
# configs/stage2_dqw2d/data_config_preprocessed.yaml
use_preprocessed: true
preprocessed_data: zihaojing/EDT-Former-sft-data
| Resource | Link |
|---|---|
| Pretrain Data | zihaojing/EDT-Former-pretrain-data |
| Encoder (Stage 1) | zihaojing/EDT-Former-encoder |
| Full Model (Stage 2) | zihaojing/EDT-Former-model |
| Code | selmiss/DQ-Former |
@inproceedings{jing2026edtformer,
title={Entropy-Guided Dynamic Tokens for Graph-LLM Alignment in Molecular Understanding},
author={Jing, Zihao and Zeng, Qiuhao and Fang, Ruiyi and Sun, Yan and Wang, Boyu and Hu, Pingzhao},
booktitle={International Conference on Learning Representations (ICLR)},
year={2026}
}