ersilia-os/eos9q2i

Python

0

14 commits

updated Oct 14, 2026

See the code

README

Mol-JEPA A multimodal Joint Embedding Predictive Architecture for Molecules

Multimodal joint-embedding predictive architecture that turns a SMILES string into a 512-dimensional embedding carrying predicted biological, phenotypic and quantum context, pretrained by modality masking over 4.69 M compounds.

This model was incorporated on 2026-09-02.Last packaged on 2026-10-14.

Information

Identifiers

  • Ersilia Identifier: eos9q2i
  • Slug: mol-jepa

Domain

  • Task: Representation
  • Subtask: Featurization
  • Biomedical Area: Any
  • Target Organism: Any
  • Tags: Embedding

Input

  • Input: Compound
  • Input Dimension: 1

Output

  • Output Dimension: 512
  • Output Consistency: Fixed
  • Interpretation: The output of this template model should be interpreted like this.

Below are the Output Columns of the model:

NameTypeDirectionDescription
feat_000floatembedding feature 0
feat_001floatembedding feature 1
feat_002floatembedding feature 2
feat_003floatembedding feature 3
feat_004floatembedding feature 4
feat_005floatembedding feature 5
feat_006floatembedding feature 6
feat_007floatembedding feature 7
feat_008floatembedding feature 8
feat_009floatembedding feature 9

10 of 512 columns are shown

Source and Deployment

Resource Consumption

  • Model Size (Mb): 174
  • Environment Size (Mb): 8092
  • Image Size (Mb): 8307.95

Computational Performance (seconds):

  • 10 inputs: 38.14
  • 100 inputs: 22.4
  • 10000 inputs: 316.69

References

License

This package is licensed under a GPL-3.0 license. The model contained within this package is licensed under a CC-BY-4.0 license.

Notice: Ersilia grants access to models as is, directly from the original authors, please refer to the original code repository and/or publication if you use the model in your research.

Use

To use this model locally, you need to have the Ersilia CLI installed. The model can be fetched using the following command:

# fetch model from the Ersilia Model Hub
ersilia fetch eos9q2i

Then, you can serve, run and close the model as follows:

# serve the model
ersilia serve eos9q2i
# generate an example file
ersilia example -n 3 -f my_input.csv
# run the model
ersilia run -i my_input.csv -o my_output.csv
# close the model
ersilia close

About Ersilia

The Ersilia Open Source Initiative is a tech non-profit organization fueling sustainable research in the Global South. Please cite the Ersilia Model Hub if you've found this model to be useful. Always let us know if you experience any issues while trying to run it. If you want to contribute to our mission, consider donating to Ersilia!

ersilia-os/eos9q2i

Python

0

14 commits

updated Oct 14, 2026

See the code

README

Mol-JEPA A multimodal Joint Embedding Predictive Architecture for Molecules

Multimodal joint-embedding predictive architecture that turns a SMILES string into a 512-dimensional embedding carrying predicted biological, phenotypic and quantum context, pretrained by modality masking over 4.69 M compounds.

This model was incorporated on 2026-09-02.Last packaged on 2026-10-14.

Information

Identifiers

  • Ersilia Identifier: eos9q2i
  • Slug: mol-jepa

Domain

  • Task: Representation
  • Subtask: Featurization
  • Biomedical Area: Any
  • Target Organism: Any
  • Tags: Embedding

Input

  • Input: Compound
  • Input Dimension: 1

Output

  • Output Dimension: 512
  • Output Consistency: Fixed
  • Interpretation: The output of this template model should be interpreted like this.

Below are the Output Columns of the model:

NameTypeDirectionDescription
feat_000floatembedding feature 0
feat_001floatembedding feature 1
feat_002floatembedding feature 2
feat_003floatembedding feature 3
feat_004floatembedding feature 4
feat_005floatembedding feature 5
feat_006floatembedding feature 6
feat_007floatembedding feature 7
feat_008floatembedding feature 8
feat_009floatembedding feature 9

10 of 512 columns are shown

Source and Deployment

Resource Consumption

  • Model Size (Mb): 174
  • Environment Size (Mb): 8092
  • Image Size (Mb): 8307.95

Computational Performance (seconds):

  • 10 inputs: 38.14
  • 100 inputs: 22.4
  • 10000 inputs: 316.69

References

License

This package is licensed under a GPL-3.0 license. The model contained within this package is licensed under a CC-BY-4.0 license.

Notice: Ersilia grants access to models as is, directly from the original authors, please refer to the original code repository and/or publication if you use the model in your research.

Use

To use this model locally, you need to have the Ersilia CLI installed. The model can be fetched using the following command:

# fetch model from the Ersilia Model Hub
ersilia fetch eos9q2i

Then, you can serve, run and close the model as follows:

# serve the model
ersilia serve eos9q2i
# generate an example file
ersilia example -n 3 -f my_input.csv
# run the model
ersilia run -i my_input.csv -o my_output.csv
# close the model
ersilia close

About Ersilia

The Ersilia Open Source Initiative is a tech non-profit organization fueling sustainable research in the Global South. Please cite the Ersilia Model Hub if you've found this model to be useful. Always let us know if you experience any issues while trying to run it. If you want to contribute to our mission, consider donating to Ersilia!