This repository is a curated reading list for deep clustering and closely related clustering methods. It is designed as a lightweight entry point for researchers who want a broad view of the area, representative papers, and public codebases when available.
This repository intentionally has a relatively broad scope. In addition to canonical deep clustering papers, it may also include related work on multi-view clustering, graph clustering, subspace clustering, fairness, optimal transport, and application-driven clustering when they are useful to the deep clustering community.
| Survey Paper | Conference |
|---|---|
| 🚩 A Comprehensive Survey on Deep Clustering: Taxonomy, Challenges, and Future Directions | ACM Computing Surveys |
| Deep Clustering: A Comprehensive Survey | IEEE TNNLS 2024 |
| A Survey of Clustering With Deep Learning: From the Perspective of Network Architecture | IEEE ACCESS 2018 |
| Clustering with Deep Learning: Taxonomy and New Methods | arXiv 2018 |
| Unsupervised clustering for deep learning: A tutorial survey | APH 2018 |
A dedicated graph-focused collection is also maintained in Deep Graph Clustering.
| Paper | Method | Conference | Code |
|---|---|---|---|
| Single-Cell Spatial Proteomics Clustering by Decoupling Spatiality and Expression | spClust | KDD 2026 | - |
| Multi-View Hierarchical Alignment Learning for Spatial Transcriptomics | MHAL | CVPR 2026 | - |
| A Deep Variational Approach to Clustering Survival Data | VaDeSC | ICLR 2022 | TensorFlow |
| Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis | ItClust | Nature machine intelligence 2020 | Keras |
| Clustering single-cell RNA-seq data with a model-based deep learning approach | scDeepCluster | Nature Machine Intelligence 2019 | Keras |
| Paper | Method | Conference | Code |
|---|---|---|---|
| Sign prediction in sparse social networks using clustering and collaborative filtering | - | TJSC 2022 | - |
| CCCF: Improving collaborative filtering via scalable user-item co-clustering | CCCF | WSDM 2016 | - |
Suggestions, corrections, and pull requests are welcome, especially for:
If you find this repository useful to your research or work, please consider starring it.
559 followers · starred Apr 2021
1,224 followers · starred Aug 2021
1,952 followers · starred Oct 2019
141 followers · starred Apr 2020
This repository is a curated reading list for deep clustering and closely related clustering methods. It is designed as a lightweight entry point for researchers who want a broad view of the area, representative papers, and public codebases when available.
This repository intentionally has a relatively broad scope. In addition to canonical deep clustering papers, it may also include related work on multi-view clustering, graph clustering, subspace clustering, fairness, optimal transport, and application-driven clustering when they are useful to the deep clustering community.
| Survey Paper | Conference |
|---|---|
| 🚩 A Comprehensive Survey on Deep Clustering: Taxonomy, Challenges, and Future Directions | ACM Computing Surveys |
| Deep Clustering: A Comprehensive Survey | IEEE TNNLS 2024 |
| A Survey of Clustering With Deep Learning: From the Perspective of Network Architecture | IEEE ACCESS 2018 |
| Clustering with Deep Learning: Taxonomy and New Methods | arXiv 2018 |
| Unsupervised clustering for deep learning: A tutorial survey | APH 2018 |
A dedicated graph-focused collection is also maintained in Deep Graph Clustering.
| Paper | Method | Conference | Code |
|---|---|---|---|
| Single-Cell Spatial Proteomics Clustering by Decoupling Spatiality and Expression | spClust | KDD 2026 | - |
| Multi-View Hierarchical Alignment Learning for Spatial Transcriptomics | MHAL | CVPR 2026 | - |
| A Deep Variational Approach to Clustering Survival Data | VaDeSC | ICLR 2022 | TensorFlow |
| Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis | ItClust | Nature machine intelligence 2020 | Keras |
| Clustering single-cell RNA-seq data with a model-based deep learning approach | scDeepCluster | Nature Machine Intelligence 2019 | Keras |
| Paper | Method | Conference | Code |
|---|---|---|---|
| Sign prediction in sparse social networks using clustering and collaborative filtering | - | TJSC 2022 | - |
| CCCF: Improving collaborative filtering via scalable user-item co-clustering | CCCF | WSDM 2016 | - |
Suggestions, corrections, and pull requests are welcome, especially for:
If you find this repository useful to your research or work, please consider starring it.
559 followers · starred Apr 2021
1,224 followers · starred Aug 2021
1,952 followers · starred Oct 2019
141 followers · starred Apr 2020