stmdit-anon/stmdit-checkpoints

Model

0

stars

30

commits

1

linked in READMEs

Apr 28, 2026

updated

diffusion
histopathology
icml-2026-sd4h-workshop
spatial-transcriptomics

README

STMDiT — Inference Checkpoints

EMA-only inference weights for every model row reported in the ICML 2026 SD4H workshop submission Transcriptomics-Conditioned Virtual Tissue Synthesis via Diffusion Transformers.

Each subfolder contains a single model:

  • model.pt — EMA-only state dict (PyTorch .pt)
  • training_config.yaml — the original training YAML
  • README.md — per-model card

Models

row_idPaper label
pixcell-bPixCell-B
pixcell-flow-bPixCell-Flow-B
adaln-ddpm-p01PixCell-GE-B (p=0.1)
adaln-ddpm-p02PixCell-GE-B-p02
adaln-ddpm-p03PixCell-GE-B-p03
adaln-ddpm-p05PixCell-GE-B-p05
adaln-ddpm-p06PixCell-GE-B-p06
adaln-flow-p01PixCell-Flow-GE-B (p=0.1)
adaln-flow-p02PixCell-Flow-GE-B-p02
adaln-flow-p03PixCell-Flow-GE-B-p03
adaln-flow-p05PixCell-Flow-GE-B-p05
xattn-direct-p01XAttn-Direct (p=0.1)
xattn-gsa-p01XAttn-GSA (p=0.1)
xattn-perceiver-p01XAttn-Perceiver (p=0.1)
xattn-pma-p01XAttn-PMA (p=0.1)
xattn-perceiver-p05XAttn-Perceiver-p05
xattn-perceiver-p06XAttn-Perceiver-p06
xattn-pma-p05XAttn-PMA-p05
xattn-pma-p06XAttn-PMA-p06
ptpl-adaln-p05PTPL-AdaLN-B (p=0.5)
ptpl-adaln-p06PTPL-AdaLN-B-p06
ptpl-adaln-p07PTPL-AdaLN-B-p07
ptpl-xattn-perceiver-p05PTPL-XAttn-Perceiver-B (p=0.5)
ptpl-xattn-perceiver-p06PTPL-XAttn-Perceiver-B-p06
ptpl-xattn-perceiver-p07PTPL-XAttn-Perceiver-B-p07
ptpl-xattn-pma-p05PTPL-XAttn-PMA-B (p=0.5)
ptpl-xattn-pma-p06PTPL-XAttn-PMA-B-p06
ptpl-xattn-pma-p07PTPL-XAttn-PMA-B-p07

Usage

from huggingface_hub import snapshot_download
ckpt_dir = snapshot_download(
    repo_id="stmdit-anon/stmdit-checkpoints",
    allow_patterns="xattn-perceiver-p05/*",   # pick one model by row_id
)
# ckpt_dir / "xattn-perceiver-p05" / "model.pt"

See the public anonymized code repo (linked from the OpenReview submission) for the loader, demo notebook, and end-to-end inference example.

Contributors

stmdit-anon

30 commits

stmdit-anon/stmdit-checkpoints

Model

0

stars

30

commits

1

linked in READMEs

Apr 28, 2026

updated

diffusion
histopathology
icml-2026-sd4h-workshop
spatial-transcriptomics

README

STMDiT — Inference Checkpoints

EMA-only inference weights for every model row reported in the ICML 2026 SD4H workshop submission Transcriptomics-Conditioned Virtual Tissue Synthesis via Diffusion Transformers.

Each subfolder contains a single model:

  • model.pt — EMA-only state dict (PyTorch .pt)
  • training_config.yaml — the original training YAML
  • README.md — per-model card

Models

row_idPaper label
pixcell-bPixCell-B
pixcell-flow-bPixCell-Flow-B
adaln-ddpm-p01PixCell-GE-B (p=0.1)
adaln-ddpm-p02PixCell-GE-B-p02
adaln-ddpm-p03PixCell-GE-B-p03
adaln-ddpm-p05PixCell-GE-B-p05
adaln-ddpm-p06PixCell-GE-B-p06
adaln-flow-p01PixCell-Flow-GE-B (p=0.1)
adaln-flow-p02PixCell-Flow-GE-B-p02
adaln-flow-p03PixCell-Flow-GE-B-p03
adaln-flow-p05PixCell-Flow-GE-B-p05
xattn-direct-p01XAttn-Direct (p=0.1)
xattn-gsa-p01XAttn-GSA (p=0.1)
xattn-perceiver-p01XAttn-Perceiver (p=0.1)
xattn-pma-p01XAttn-PMA (p=0.1)
xattn-perceiver-p05XAttn-Perceiver-p05
xattn-perceiver-p06XAttn-Perceiver-p06
xattn-pma-p05XAttn-PMA-p05
xattn-pma-p06XAttn-PMA-p06
ptpl-adaln-p05PTPL-AdaLN-B (p=0.5)
ptpl-adaln-p06PTPL-AdaLN-B-p06
ptpl-adaln-p07PTPL-AdaLN-B-p07
ptpl-xattn-perceiver-p05PTPL-XAttn-Perceiver-B (p=0.5)
ptpl-xattn-perceiver-p06PTPL-XAttn-Perceiver-B-p06
ptpl-xattn-perceiver-p07PTPL-XAttn-Perceiver-B-p07
ptpl-xattn-pma-p05PTPL-XAttn-PMA-B (p=0.5)
ptpl-xattn-pma-p06PTPL-XAttn-PMA-B-p06
ptpl-xattn-pma-p07PTPL-XAttn-PMA-B-p07

Usage

from huggingface_hub import snapshot_download
ckpt_dir = snapshot_download(
    repo_id="stmdit-anon/stmdit-checkpoints",
    allow_patterns="xattn-perceiver-p05/*",   # pick one model by row_id
)
# ckpt_dir / "xattn-perceiver-p05" / "model.pt"

See the public anonymized code repo (linked from the OpenReview submission) for the loader, demo notebook, and end-to-end inference example.

Contributors

stmdit-anon

30 commits