masih4/MedImageRetrieval

Medical image retrieval using SOAT feature extractor

mahmoodlab/TRIDENT

Toolkit for large-scale whole-slide image processing.

dazhangyu123/AEM

AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image…

JamesQFreeman/mlx-vit-tune

Fine-tune Vision Transformers on Apple Silicon with MLX. Unsloth-like API for ViT-B/L/H with LoRA,…

hutaobo/stGPT

stGPT links tissue images, gene expression, and structure context for spatial transcriptomics.

mahmoodlab/TRIDENT

Toolkit for large-scale whole-slide image processing.

mahmoodlab/HEST

Integrating histology and spatial transcriptomics - NeurIPS 2024

AtlasAnalyticsLab/AtlasPatch

AtlasPatch: An Efficient and Scalable Tool for Whole Slide Image Preprocessing

MICS-Lab/thunder

[NeurIPS25 D&B Spotlight] A tile-level histopathology image understanding benchmark

lingxitong/PFM_Segmentation

Pathology Foundation Models Meet Semantic Segmentation

WonderLandxD/PIANO

An easy-to-use PyTorch library for Pathology Image ANalysis Orchestrator (PIANO), including…

Sbrussee/PathBench-MIL

PathBench-MIL: A comprehensive, flexible Benchmarking / AutoML framework for multiple instance…

dazhangyu123/AEM

AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image…

lingxitong/HistoROIBench

Pathology ROI Datasets BenchMarking Framework For Pathology Foundation Models

pathology-data-mining/Mussel

Computational pathology toolkit: tiling, feature extraction, and annotation for whole-slide images…

DELTA-TJ-submission/PASTA

A plug-and-play foundation model paradigm for gigapixel virual tissue phenotyping

PathologyDataScience/triteia

A python client for pathology model inference with the Triton Inference Server.

IUCompPath/aegis

Multiple Instance Learning framework for multi-modal classification with histopathology data

Hyewon0309/speculative-encoding

Official repo of Speculative Encoding for Efficient Gigapixel Whole Slide Image Analysis