linjc16/TrialAlign

Dataset

2

stars

9

commits

1

linked in READMEs

Dec 31, 2024

updated

clinical_trial

README

TrialAlign

πŸ€— [Panacea Model] β€’ πŸ’» [Github Repo] β€’ πŸ“ƒ [Panacea Paper]

TrialAlign datasets are the continual pretraining corpus for "Panacea: A foundation model for clinical trial search, summarization, design, and recruitment". TrialAlign contains 793,279 clinical trial design documents worldwide and 1,113,207 clinical study papers.

Load the dataset

pip install -U datasets fsspec
from datasets import load_dataset
ds = load_dataset('linjc16/ctgov', split='train')

Statistics of TrialAlign

SourceCounts
ClinicalTrials.gov432,676
ChiCTR (China)65,181
EUCTR (EU)43,315
JRCT (Japan)60,645
ANZCTR (Australia/New Zealand)23,374
ISRCTN.org22,966
ReBEC (Brazil)5,889
CRIS (Korea)8,428
DRKS (Germany)13,789
IRCT (Iran)34,097
TCTR (Thailand)7,443
LTR (Netherlands)9,768
PACTR (Africa)3,848
SLCTR (Sri Lanka)421
Trial Papers (Embase + PubMed)1,113,207

Citation

If you find our work useful, please consider citing Panacea:

@article{lin2024panacea,
  title={Panacea: A foundation model for clinical trial search, summarization, design, and recruitment},
  author={Lin, Jiacheng and Xu, Hanwen and Wang, Zifeng and Wang, Sheng and Sun, Jimeng},
  journal={arXiv preprint arXiv:2407.11007},
  year={2024}
}

Contributors

linjc16

9 commits

linjc16/TrialAlign

Dataset

2

stars

9

commits

1

linked in READMEs

Dec 31, 2024

updated

clinical_trial

README

TrialAlign

πŸ€— [Panacea Model] β€’ πŸ’» [Github Repo] β€’ πŸ“ƒ [Panacea Paper]

TrialAlign datasets are the continual pretraining corpus for "Panacea: A foundation model for clinical trial search, summarization, design, and recruitment". TrialAlign contains 793,279 clinical trial design documents worldwide and 1,113,207 clinical study papers.

Load the dataset

pip install -U datasets fsspec
from datasets import load_dataset
ds = load_dataset('linjc16/ctgov', split='train')

Statistics of TrialAlign

SourceCounts
ClinicalTrials.gov432,676
ChiCTR (China)65,181
EUCTR (EU)43,315
JRCT (Japan)60,645
ANZCTR (Australia/New Zealand)23,374
ISRCTN.org22,966
ReBEC (Brazil)5,889
CRIS (Korea)8,428
DRKS (Germany)13,789
IRCT (Iran)34,097
TCTR (Thailand)7,443
LTR (Netherlands)9,768
PACTR (Africa)3,848
SLCTR (Sri Lanka)421
Trial Papers (Embase + PubMed)1,113,207

Citation

If you find our work useful, please consider citing Panacea:

@article{lin2024panacea,
  title={Panacea: A foundation model for clinical trial search, summarization, design, and recruitment},
  author={Lin, Jiacheng and Xu, Hanwen and Wang, Zifeng and Wang, Sheng and Sun, Jimeng},
  journal={arXiv preprint arXiv:2407.11007},
  year={2024}
}

Contributors

linjc16

9 commits