---

language:

• en bigbio_language:
• English license: cc-by-2.0 multilinguality: monolingual bigbio_license_shortname: CC_BY_2p0 pretty_name: BioInfer homepage: https://github.com/metalrt/ppi-dataset bigbio_pubmed: True bigbio_public: True bigbio_tasks:
• RELATION_EXTRACTION
• NAMED_ENTITY_RECOGNITION

---

Dataset Card for BioInfer

Dataset Description

• Homepage: https://github.com/metalrt/ppi-dataset
• Pubmed: True
• Public: True
• Tasks: RE,NER

A corpus targeted at protein, gene, and RNA relationships which serves as a resource for the development of information extraction systems and their components such as parsers and domain analyzers. Currently, the corpus contains 1100 sentences from abstracts of biomedical research articles annotated for relationships, named entities, as well as syntactic dependencies.

Citation Information

@article{pyysalo2007bioinfer,
  title        = {BioInfer: a corpus for information extraction in the biomedical domain},
  author       = {
    Pyysalo, Sampo and Ginter, Filip and Heimonen, Juho and Bj{"o}rne, Jari
    and Boberg, Jorma and J{"a}rvinen, Jouni and Salakoski, Tapio
  },
  year         = 2007,
  journal      = {BMC bioinformatics},
  publisher    = {BioMed Central},
  volume       = 8,
  number       = 1,
  pages        = {1--24}
}