Genomic interval machine learning (geniml)

Geniml is a python package for building machine learning models of genomic interval data (BED files). It also includes ancillary functions to support other types of analyses of genomic interval data.

Documentation is hosted at https://docs.bedbase.org/geniml/.

Installation

To install geniml use this commands.

Without specifying dependencies, the default dependencies will be installed, which DO NOT include machine learning (ML) or heavy processing libraries.

From pypi:

pip install geniml

or install the latest version from the GitHub repository:

pip install git+https://github.com/databio/geniml.git

To install Machine learning dependencies use this command:

From pypi:

pip install geniml[ml]

Development

Run tests (from /tests) with pytest. Please read the contributor guide to contribute.